Simulation of the Benchmark Datasets -- A Panel of Learning Methods for the Reconstruction of Gene Regulatory Networks in a Systems Genetics Context -- Benchmarking a simple yet effective approach for inferring gene regulatory networks from systems genetics data -- Differential Equation based reverse-engineering algorithms: pros and cons -- Gene regulatory network inference from systems genetics data using tree-based methods -- Extending partially known networks -- Integration of genetic variation as external perturbation to reverse engineer regulatory networks from gene expression data -- Using Simulated Data to Evaluate Bayesian Network Approach for Integrating Diverse Data.