Session 1: Microarray and Systems Biology I (Networks) -- Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data -- Biological Network Inference Using Redundancy Analysis -- A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data -- Session 2: Microarray and Systems Biology II -- Analysing Periodic Phenomena by Circular PCA -- Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets -- Mining Spatial Gene Expression Data for Association Rules -- Session 3: Medical, SNPs, Genomics I -- Individualized Predictions of Survival Time Distributions from Gene Expression Data Using a Bayesian MCMC Approach -- Comparing Logic Regression Based Methods for Identifying SNP Interactions -- Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei -- Session 4: Medical, SNPs, Genomics II -- Structural Screening of HIV-1 Protease/Inhibitor Docking by Non-parametric Binomial Distribution Test -- satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae) -- A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive Chemical Compounds -- Session 5: Systems Biology -- A Novel Method for Flux Distribution Computation in Metabolic Networks -- Inverse Bifurcation Analysis of a Model for the Mammalian G 1/S Regulatory Module -- Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity -- Modelling and Simulation of the Genetic Phenomena of Additivity and Dominance via Gene Networks of Parallel Aggregation Processes -- Session 6: Sequence Analysis I (Coding) -- Protein Remote Homology Detection Based on Binary Profiles -- Biological Sequences Encoding for Supervised Classification -- Fast Search Algorithms for Position Specific Scoring Matrices -- Session 7: Sequence Analysis II -- A Markovian Approach for the Segmentation of Chimpanzee Genome -- Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data -- Stem Kernels for RNA Sequence Analyses -- Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models -- Session 8: Proteomics I -- Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server -- Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences -- Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions -- Session 9: Proteomics II (Measurements) -- Bayesian Inference for 2D Gel Electrophoresis Image Analysis -- SimShiftDB: Chemical-Shift-Based Homology Modeling -- Annotation of LC/ESI-MS Mass Signals -- Session 10: Proteomics III (Structure) -- Stochastic Protein Folding Simulation in the d-Dimensional HP-Model -- Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction -- Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem -- Session 11: Databases, Web and Text Analysis -- An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra -- Ontology-Based MEDLINE Document Classification -- Integrating Mutations Data of the TP53 Human Gene in the Bioinformatics Network Environment -- Efficient and Scalable Indexing Techniques for Biological Sequence Data.