Algorithms for Exploring the Space of Gene Tree/Species Tree Reconciliations -- Limitations of Pseudogenes in Identifying Gene Losses -- Duplication Mechanism and Disruptions in Flanking Regions Influence the Fate of Mammalian Gene Duplicates -- Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evolution -- Discovering Local Patterns of Co-evolution -- Ancestral Reconstruction by Asymmetric Wagner Parsimony over Continuous Characters and Squared Parsimony over Distributions -- An Alignment-Free Distance Measure for Closely Related Genomes -- Gene Team Tree: A Compact Representation of All Gene Teams -- Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer -- An Evolutionary Study of the Human Papillomavirus Genomes -- An Algorithm for Inferring Mitogenome Rearrangements in a Phylogenetic Tree -- Perfect DCJ Rearrangement -- Sorting Genomes with Insertions, Deletions and Duplications by DCJ -- A Fast and Exact Algorithm for the Median of Three Problem-A Graph Decomposition Approach -- A Phylogenetic Approach to Genetic Map Refinement -- Sorting Cancer Karyotypes by Elementary Operations -- On Computing the Breakpoint Reuse Rate in Rearrangement Scenarios -- Hurdles Hardly Have to Be Heeded -- Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny.