Tracing the Early Cell Divisions of Mouse Embryos by Single Cell RNA-Seq -- Successes and Failures of Elegant Algorithms in Computational Biology -- Modeling without Borders: Creating and Annotating VCell Models Using the Web -- Touring Protein Space with Matt -- Fixed-Parameter Algorithm for General Pedigrees with a Single Pair of Sites -- Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model -- Human Genome Annotation -- Extensions and Improvements to the Chordal Graph Approach to the Multi-state Perfect Phylogeny Problem -- Analysis of Gene Interactions Using Restricted Boolean Networks and Time-Series Data -- Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features -- Essential Proteins Discovery from Weighted Protein Interaction Networks -- Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets -- A Novel Approach for Compressing Phylogenetic Trees -- Structure of Proximal and Distant Regulatory Elements in the Human Genome -- Combinatorics in Recombinational Population Genomics -- Uncovering Hidden Phylogenetic Consensus -- An Agglomerate Algorithm for Mining Overlapping and Hierarchical Functional Modules in Protein Interaction Networks -- Fast Protein Structure Alignment -- Predicting and Analyzing Cellular Networks -- A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure -- Inferring Evolutionary Scenarios for Protein Domain Compositions -- Local Structural Alignment of RNA with Affine Gap Model -- Fast Computation of the Exact Hybridization Number of Two Phylogenetic Trees -- "Master-Slave" Biological Network Alignment -- Deciphering Transcription Factor Binding Patterns from Genome-Wide High Density ChIP-chip Tiling Array Data -- The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model.