Systems out of Equilibrium -- Computer Simulation Studies in Condensed Matter Physics: An Introduction -- Shake, Rattle or Roll: Things to do with a Granular Mixture on a Computer -- A New Method of Investigating Equilibrium Properties from Nonequilibrium Work -- Numerical Simulations of Critical Dynamics far from Equilibrium -- Soft and Disordered Materials -- Entropy Driven Phase Separation -- Supercooled Liquids under Shear: Computational Approach -- Optimizing Glasses with Extremal Dynamics -- Stochastic Collision Molecular Dynamics Simulations for Ion Transfer Across Liquid-Liquid Interfaces -- Biological Systems -- Generalized-Ensemble Simulations of Small Proteins -- A Biological Coevolution Model with Correlated Individual-Based Dynamics -- An Image Recognition Algorithm for Automatic Counting of Brain Cells of Fruit Fly -- Preferred Binding Sites of Gene-Regulatory Proteins Based on the Deterministic Dead-End Elimination Algorithm -- Algorithms and Methods -- Geometric Cluster Algorithm for Interacting Fluids -- Polymer Simulations with a Flat Histogram Stochastic Growth Algorithm -- Convergence of the Wang-Landau Algorithm and Statistical Error -- Wang-Landau Sampling with Cluster Updates -- Multibaric-Multithermal Simulations for Lennard-Jones Fluids -- A Successive Umbrella Sampling Algorithm to Sample and Overcome Free Energy Barriers -- Computer Tools -- C++ and Generic Programming for Rapid Development of Monte Carlo Simulations -- Visualization of Vector Spin Configurations -- The BlueGene/L Project -- Molecules, Clusters and Nanoparticles -- All-Electron Path Integral Monte Carlo Simulations of Small Atoms and Molecules -- Projective Dynamics in Realistic Models of Nanomagnets -- Cumulants for an Ising Model for Folded 1-d Small-World Materials -- Embryonic Forms of Nickel and Palladium: A Molecular Dynamics Computer Simulation -- Surfaces and Alloys -- Usage of Pattern Recognition Scheme in Kinetic Monte Carlo Simulations: Application to Cluster Diffusion on Cu(111) -- Including Long-Range Interactions in Atomistic Modelling of Diffusional Phase Changes -- Br Electrodeposition on Au(100): From DFT to Experiment -- Simulation of ZnSe, ZnS Coating on CdSe Substrate: The Electronic Structure and Absorption Spectra -- Simulation of Islands and Vacancy Structures for Si/Ge-covered Si(001) Using a Hybrid MC-MD Algorithm -- Spin-Polarons in the FM Kondo Model.