Protein Folding Intermediates -- Pathways and Mechanism of Protein Folding -- The Folding Pathway of Apomyoglobin -- Circular Dichroism Stopped-Flow Studies of Folding Intermediates -- Native-like Intermediates in Protein Folding -- A First-Order Phase Transition Between a Compact Denatured State and a Random Coil State in Staphylococcal Nuclease -- Studies in Protein Stability -- Studies on "Hyperstable" Proteins: Crystallins from the Eye-Lens and Enzymes from Thermophilic Bacteria -- Origins of Mutation Induced Stability Changes in Barnase: An Analysis Based on Free Energy Calculations -- Basic Interactions -- Monte Carlo Simulation of Electrostatic Interactions in Biomolecules -- The Molecular Origin of the Large Entropies of Hydrophobic Hydration -- Statistical Mechanical Models and Protein States -- Statistical Mechanics of Secondary Structures in Proteins: Characterization of a Molten Globule-like State -- Hydrophobic Zippers: A Conformational Search Strategy for Proteins -- Theoretical Perspectives on In Vitro and In Vivo Protein Folding -- On the Configurations Accessible to Folded and to Denatured Proteins -- Exploring Conformation Space -- Experiences with Dihedral Angle Space Monte Carlo Search for Small Protein Structures -- Constrained Langevin Dynamics of Polypeptide Chains -- MOIL: A Molecular Dynamics Program with Emphasis on Conformational Searches and Reaction Path Calculations -- Flexibility in the Fc Region of Immunoglobulin G -- NMR Data and Protein Structure -- Computer-Supported Protein Structure Determination by NMR -- Enumeration with Constraints: A Possible Approach to Protein Structure Reconstruction from NMR Data -- A Decomposition of the nOe Intensity Matrix -- Membrane Proteins -- Structure and Dynamics of Membrane Proteins -- Steps Toward Predicting the Structure of Membrane Proteins -- The Protein Data Base: Fold Families and Structure Prediction -- Protein Fold Families and Structural Motifs -- Data Based Modeling of Proteins -- Applications of Knowledge Based Mean Fields in the Determination of Protein Structures -- A New Approach to Protein Folding Calculations -- Knowledge Based Potentials for Predicting the Three-Dimensional Conformation of Proteins -- Protein-Substrate Interactions -- Protein-Protein Recognition: An Analysis by Docking Simulation -- Molecular Dynamics Simulation of an Antigen-Antibody Complex: Hydration Structure and Dissociation Dynamics -- Multiple Conformations of Cystatin, Mung Bean Inhibitor and Serpins -- Structure and tRNA Phe-Binding Properties of the Zinc Finger Motifs of HIV-1 Nucleocapsid Protein -- Electrostatic Complementarity in Protein-Substrate Interactions and Ligand Design -- Molecular Engineering in the Preparation of Bioactive Peptides -- Author Index.